Transcript: lnc-GPAT4-4:2

Basic information

LNCipedia transcript ID: lnc-GPAT4-4:2 
LNCipedia gene ID: lnc-GPAT4-4
Location (hg38): chr8:41766677-41777325
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5791 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000098664.1|MICT00000342916.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.3237 non-coding 
CPAT coding probability 12.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPAT4-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RP11-930P14.1.1-4:2
5.0 lnc-RP11-930P14.1.1-4:2
5.1 lnc-KCNU1-80:2
5.2 lnc-GPAT4-4:2