Transcript: lnc-GOPC-1:4

Basic information

LNCipedia transcript ID: lnc-GOPC-1:4 
LNCipedia gene ID: lnc-GOPC-1
Location (hg38): chr6:117599968-117675304
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 63413 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000089732.1|ENCT00000390246.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 799.0016 coding 
CPAT coding probability 2.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GOPC-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GOPC-1:4
5.0 lnc-GOPC-1:4
5.1 lnc-HDAC2-41:3
5.2 lnc-GOPC-1:4