Transcript: lnc-GOPC-1:1

Basic information

LNCipedia transcript ID: lnc-GOPC-1:1 
LNCipedia gene ID: lnc-GOPC-1
RefSeq ID: NR_110854
Location (hg38): chr6:117672813-117675284
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1647 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000501802; TCONS_00011550; NONHSAT114686; NR_110854; NR_110854.1
Alternative gene names: ENSG00000245439; XLOC_005818; linc-GOPC; AL590303.1; LOC101927919


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.0704 non-coding 
CPAT coding probability 11.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GOPC-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GOPC-1:1
3.1 lnc-GOPC-1:1
4.0 lnc-GOPC-1:1
4.1 lnc-GOPC-1:1
5.0 lnc-GOPC-1:1
5.1 lnc-HDAC2-41:6
5.2 lnc-GOPC-1:1