Transcript: lnc-GLYATL2-2:3

Basic information

LNCipedia transcript ID: lnc-GLYATL2-2:3 
LNCipedia gene ID: lnc-GLYATL2-2
Ensembl Gene ID: ENSG00000255240
Ensembl Transcript ID: ENST00000525714
Location (hg38): chr11:58958217-58979285
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 894 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000525714.1; RP11-142C4.6-002; OTTHUMT00000394604.1; NONHSAT021494
Alternative gene names: ENSG00000255240.1; RP11-142C4.6; OTTHUMG00000167434.1; ENSG00000255240.5; AP001636.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.5056 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GLYATL2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GLYATL2-2:3
4.0 lnc-GLYATL2-2:3
4.1 lnc-GLYATL2-2:3
5.0 lnc-GLYATL2-2:3
5.1 lnc-OR5M11-31:4
5.2 lnc-GLYATL2-2:3