Transcript: lnc-GLRB-3:1

Basic information

LNCipedia transcript ID: lnc-GLRB-3:1 
LNCipedia gene ID: lnc-GLRB-3
Ensembl Gene ID: ENSG00000248912
Ensembl Transcript ID: ENST00000512609
Location (hg38): chr4:156686664-156692636
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 947 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007667; ENST00000512609; ENST00000512609.1; RP11-171N4.4-001; OTTHUMT00000366081.1; NONHSAT098952
Alternative gene names: XLOC_003757; linc-GLRB-1; ENSG00000248912; RP11-171N4.4; ENSG00000248912.1; OTTHUMG00000161780.1; AC096736.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.5537 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GLRB-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GLRB-1:1
3.1 lnc-GLRB-3:1
4.0 lnc-GLRB-3:1
4.1 lnc-GLRB-3:1
5.0 lnc-GLRB-3:1
5.1 lnc-GRIA2-10:1
5.2 lnc-GLRB-3:1