Transcript: lnc-GLI2-5:1

Basic information

LNCipedia transcript ID: lnc-GLI2-5:1 
LNCipedia gene ID: lnc-GLI2-5
Ensembl Gene ID: ENSG00000236145
Ensembl Transcript ID: ENST00000432984
Location (hg38): chr2:121178327-121182580
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002991; ENST00000432984; ENST00000432984.1; AC079988.3-001; OTTHUMT00000330753.1; NONHSAT074027
Alternative gene names: XLOC_001645; linc-TSN-2; ENSG00000236145; AC079988.3; ENSG00000236145.1; OTTHUMG00000153330.1; AC079988.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.5263 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GLI2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GLI2-5:1
3.1 lnc-GLI2-5:1
4.0 lnc-GLI2-5:1
4.1 lnc-GLI2-5:1
5.0 lnc-GLI2-5:1
5.1 lnc-TMEM37-26:1
5.2 lnc-GLI2-5:1