Transcript: lnc-GJC1-1:1

Basic information

LNCipedia transcript ID: lnc-GJC1-1:1 
LNCipedia gene ID: lnc-GJC1-1
Ensembl Gene ID: ENSG00000267405
Ensembl Transcript ID: ENST00000591137
Location (hg38): chr17:44794747-44797783
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053974; ENST00000591137.1
Alternative gene names: ENSG00000267405.1; CTC-296K1.4; AC005180.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.6143 non-coding 
CPAT coding probability 1.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GJC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GJC1-1:1
4.0 lnc-GJC1-1:1
4.1 lnc-GJC1-1:1
5.0 lnc-GJC1-1:1
5.1 lnc-GFAP-8:1
5.2 lnc-GJC1-1:1