Transcript: lnc-GJB2-3:1

Basic information

LNCipedia transcript ID: lnc-GJB2-3:1 
LNCipedia gene ID: lnc-GJB2-3
Location (hg38): chr13:20173292-20176037
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2746 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000016446.1|FTMT25000000156.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.3036 non-coding 
CPAT coding probability 5.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GJB2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GJB2-3:1
5.0 lnc-GJB2-3:1
5.1 lnc-ZDHHC20-26:1
5.2 lnc-GJB2-3:1