Transcript: lnc-GINS1-2:1

Basic information

LNCipedia transcript ID: lnc-GINS1-2:1 
LNCipedia gene ID: lnc-GINS1-2
Ensembl Gene ID: ENSG00000226465
Ensembl Transcript ID: ENST00000376445
Location (hg38): chr20:25751218-25752761
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 320 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000376445.3; RP13-401N8.1-001; OTTHUMT00000078460.1
Alternative gene names: ENSG00000226465.1; RP13-401N8.1; OTTHUMG00000032135.1; AL390198.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.7667 non-coding 
CPAT coding probability 4.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GINS1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GINS1-2:1
4.0 lnc-GINS1-2:1
4.1 lnc-GINS1-2:1
5.0 lnc-GINS1-2:1
5.1 lnc-CST8-45:7
5.2 lnc-GINS1-2:1