Transcript: lnc-GGPS1-16:1

Basic information

LNCipedia transcript ID: lnc-GGPS1-16:1 
LNCipedia gene ID: lnc-GGPS1-16
Location (hg38): chr1:234979306-234980405
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1100 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000040027.1|FTMT20400011842.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -160.6817 non-coding 
CPAT coding probability 4.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GGPS1-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GGPS1-16:1
5.0 lnc-GGPS1-16:1
5.1 lnc-KCNK1-34:1
5.2 lnc-GGPS1-16:1