Transcript: lnc-GDPD4-2:1

Basic information

LNCipedia transcript ID: lnc-GDPD4-2:1 
LNCipedia gene ID: lnc-GDPD4-2
Ensembl Gene ID: ENSG00000254988
Ensembl Transcript ID: ENST00000530190
Location (hg38): chr11:76955417-76978619
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 568 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530190.1; CTD-2547H18.1-001; OTTHUMT00000382882.1; NONHSAT023197
Alternative gene names: ENSG00000254988.1; CTD-2547H18.1; OTTHUMG00000165241.1; AP002498.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.3043 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDPD4-2:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GDPD4-2:1
4.0 lnc-GDPD4-2:1
4.1 lnc-GDPD4-2:1
5.0 lnc-GDPD4-2:1
5.1 lnc-WNT11-30:1
5.2 lnc-GDPD4-2:1