Transcript: lnc-GDF7-2:1

Basic information

LNCipedia transcript ID: lnc-GDF7-2:1 
LNCipedia gene ID: lnc-GDF7-2
Ensembl Gene ID: ENSG00000236436
Ensembl Transcript ID: ENST00000447260
Location (hg38): chr2:20859771-20861661
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1498 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002846; ENST00000447260; ENST00000447260.1; AC012361.1-001; OTTHUMT00000323904.1; NONHSAT069468
Alternative gene names: XLOC_001384; linc-KLHL29-11; ENSG00000236436; AC012361.1; ENSG00000236436.1; OTTHUMG00000151783.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.5226 non-coding 
CPAT coding probability 0.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDF7-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GDF7-1:1
3.1 lnc-GDF7-2:1
4.0 lnc-GDF7-2:1
4.1 lnc-GDF7-2:1
5.0 lnc-GDF7-2:1
5.1 lnc-SNX17-80:1
5.2 lnc-GDF7-2:1