Transcript: lnc-GBP5-5:1

Basic information

LNCipedia transcript ID: lnc-GBP5-5:1 
LNCipedia gene ID: lnc-GBP5-5
Location (hg38): chr1:89955666-89956722
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 598 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000561; ENST00000445845; ENST00000445845.1; RP11-302M6.2-001; OTTHUMT00000029425.1; NONHSAT004386
Alternative gene names: XLOC_000912; linc-GBP5-5; ENSG00000237081; RP11-302M6.2; ENSG00000237081.1; OTTHUMG00000010672.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.4551 non-coding 
CPAT coding probability 3.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GBP5-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GBP5-5:1
3.1 lnc-GBP5-5:1
4.0 lnc-GBP5-5:1
4.1 lnc-GBP5-5:1
5.0 lnc-GBP5-5:1
5.1 lnc-GBP5-5:1
5.2 lnc-GBP5-5:1