Transcript: lnc-GATB-2:2

Basic information

LNCipedia transcript ID: lnc-GATB-2:2 
LNCipedia gene ID: lnc-GATB-2
Location (hg38): chr4:151891303-151910170
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 290 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00008623
Alternative gene names: XLOC_004124; linc-PET112L-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.8153 non-coding 
CPAT coding probability 4.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATB-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PET112-2:2
3.1 lnc-PET112-2:2
4.0 lnc-PET112-2:2
4.1 lnc-PET112-2:2
5.0 lnc-PET112-2:2
5.1 lnc-TMEM154-13:2
5.2 lnc-GATB-2:2