Transcript: lnc-GAS8-1:6

Basic information

LNCipedia transcript ID: lnc-GAS8-1:6 
HGNC Gene Symbol: lnc-GAS8-1    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2193
Ensembl Gene ID: ENSG00000260923
Ensembl Transcript ID: ENST00000566864
Location (hg38): chr16:90221448-90222508
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 719 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566864.1; AC137934.1-006; OTTHUMT00000422124.1; NONHSAT144660
Alternative gene names: ENSG00000260923.1; AC137934.1; OTTHUMG00000172851.2; ENSG00000260923.5; ENSG00000260923.6; LINC02193


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.936 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAS8-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAS8-1:6
4.0 lnc-GAS8-1:6
4.1 lnc-GAS8-1:6
5.0 lnc-GAS8-1:6
5.1 lnc-SPG7-44:9
5.2 lnc-GAS8-1:6