Transcript: lnc-GAREM1-3:1

Basic information

LNCipedia transcript ID: lnc-GAREM1-3:1 
LNCipedia gene ID: lnc-GAREM1-3
Location (hg38): chr18:32072737-32073029
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 269 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000580628.1; RP11-53I6.6-001; OTTHUMT00000448275.1; NONHSAT058849
Alternative gene names: ENSG00000263664.1; RP11-53I6.6; OTTHUMG00000179805.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -317.6907 non-coding 
CPAT coding probability 1.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAREM1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAPPC8-1:1
4.0 lnc-TRAPPC8-1:1
4.1 lnc-TRAPPC8-1:1
5.0 lnc-TRAPPC8-1:1
5.1 lnc-SMAD2-121:1
5.2 lnc-GAREM1-3:1