Transcript: lnc-GAREM1-1:1

Basic information

LNCipedia transcript ID: lnc-GAREM1-1:1 
LNCipedia gene ID: lnc-GAREM1-1
Ensembl Gene ID: ENSG00000265008
Ensembl Transcript ID: ENST00000582233
Location (hg38): chr18:32091295-32092119
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 473 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582233.1; RP11-53I6.3-001; OTTHUMT00000447731.1; NONHSAT058851
Alternative gene names: ENSG00000265008.1; RP11-53I6.3; OTTHUMG00000179704.1; AC011825.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.7232 non-coding 
CPAT coding probability 16.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAREM1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRAPPC8-2:1
4.0 lnc-TRAPPC8-2:1
4.1 lnc-TRAPPC8-2:1
5.0 lnc-TRAPPC8-2:1
5.1 lnc-SMAD2-119:1
5.2 lnc-GAREM1-1:1