Transcript: lnc-GAPDH-2:2

Basic information

LNCipedia transcript ID: lnc-GAPDH-2:2 
LNCipedia gene ID: lnc-GAPDH-2
Location (hg38): chr12:6510222-6510551
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 330 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT026096; NR_004387; ENST00000459255.1
Alternative gene names: ENSG00000239002.2; SCARNA10


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.7983 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAPDH-2:2 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAPDH-2:2
4.0 lnc-GAPDH-2:2
4.1 lnc-GAPDH-2:2
5.0 lnc-GAPDH-2:2
5.1 lnc-CLEC4D-65:1
5.2 lnc-GAPDH-2:2