Transcript: lnc-GAP43-9:1

Basic information

LNCipedia transcript ID: lnc-GAP43-9:1 
LNCipedia gene ID: lnc-GAP43-9
Location (hg38): chr3:117239211-117244391
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 833 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006165; NONHSAT091327
Alternative gene names: XLOC_002770; linc-C3orf30-6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.0136 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAP43-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GAP43-6:1
3.1 lnc-GAP43-9:1
4.0 lnc-GAP43-9:1
4.1 lnc-GAP43-9:1
5.0 lnc-GAP43-9:1
5.1 lnc-TIMMDC1-50:2
5.2 lnc-GAP43-9:1