Transcript: lnc-GAN-1:1

Basic information

LNCipedia transcript ID: lnc-GAN-1:1 
LNCipedia gene ID: lnc-GAN-1
Location (hg38): chr16:81383269-81390884
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 7616 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000568107.1; MIR4720-001; OTTHUMT00000431707.2; NONHSAT143944
Alternative gene names: ENSG00000261609.1; MIR4720; OTTHUMG00000176271.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.855 non-coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAN-1:1
4.0 lnc-GAN-1:1
4.1 lnc-GAN-1:1
5.0 lnc-GAN-1:1
5.1 lnc-CRISPLD2-67:1
5.2 lnc-GAN-1:1