Transcript: lnc-GALC-2:2

Basic information

LNCipedia transcript ID: lnc-GALC-2:2 
LNCipedia gene ID: lnc-GALC-2
Ensembl Gene ID: ENSG00000258826
Ensembl Transcript ID: ENST00000557631
RefSeq ID: NR_110121
Location (hg38): chr14:88018605-88026312
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 426 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000557631; ENST00000557631.1; RP11-300J18.1-002; OTTHUMT00000410154.1; NONHSAT038170; NR_110121; ENST00000557631.5; NR_110121.1
Alternative gene names: ENSG00000258826; RP11-300J18.1; ENSG00000258826.1; OTTHUMG00000170739.1; ENSG00000258826.5; AL157955.2; LOC101928791


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -470.8813 non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALC-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALC-1:2
3.1 lnc-GALC-2:2
4.0 lnc-GALC-2:2
4.1 lnc-GALC-2:2
5.0 lnc-GALC-2:2
5.1 lnc-GALC-2:2
5.2 lnc-GALC-2:2