Transcript: lnc-FYB2-1:2

Basic information

LNCipedia transcript ID: lnc-FYB2-1:2 
LNCipedia gene ID: lnc-FYB2-1
Ensembl Gene ID: ENSG00000229913
Ensembl Transcript ID: ENST00000425435
Location (hg38): chr1:56823679-56826920
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1824 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425435.1; RP11-378I13.1-001; OTTHUMT00000022925.3; NONHSAT003460
Alternative gene names: ENSG00000229913.1; RP11-378I13.1; OTTHUMG00000008327.3; AL360295.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.196 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FYB2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf168-1:1
4.0 lnc-C1orf168-1:1
4.1 lnc-C1orf168-1:1
5.0 lnc-C1orf168-1:1
5.1 lnc-C8B-5:2
5.2 lnc-FYB2-1:2