Transcript: lnc-FXN-1:1

Basic information

LNCipedia transcript ID: lnc-FXN-1:1 
LNCipedia gene ID: lnc-FXN-1
Location (hg38): chr9:69121293-69122232
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 822 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000413932.1; RP11-265B8.4-001; OTTHUMT00000052560.1; NONHSAT131770
Alternative gene names: ENSG00000227410.1; RP11-265B8.4; OTTHUMG00000019975.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.0803 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FXN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TJP2-1:1
4.0 lnc-TJP2-1:1
4.1 lnc-TJP2-1:1
5.0 lnc-TJP2-1:1
5.1 lnc-ZNF658-33:1
5.2 lnc-FXN-1:1