Transcript: lnc-FTCDNL1-1:6

Basic information

LNCipedia transcript ID: lnc-FTCDNL1-1:6 
LNCipedia gene ID: lnc-FTCDNL1-1
Location (hg38): chr2:199760620-199773734
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 489 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005309; NONHSAT076266
Alternative gene names: XLOC_002452; linc-SATB2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.3549 non-coding 
CPAT coding probability 6.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FTCDNL1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC073043.2.1-1:5
3.1 lnc-AC073043.2.1-1:5
4.0 lnc-AC073043.2.1-1:5
4.1 lnc-AC073043.2.1-1:5
5.0 lnc-AC073043.2.1-1:5
5.1 lnc-HSPD1-37:6
5.2 lnc-FTCDNL1-1:6