Transcript: lnc-FTCDNL1-1:4

Basic information

LNCipedia transcript ID: lnc-FTCDNL1-1:4 
LNCipedia gene ID: lnc-FTCDNL1-1
Location (hg38): chr2:199662787-199848873
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1691 bp
Exons: 5
Sources: Broad Institute
Alternative transcript names: TCONS_00004543
Alternative gene names: XLOC_002452; linc-SATB2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.6752 non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FTCDNL1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC073043.2.1-1:3
3.1 lnc-AC073043.2.1-1:3
4.0 lnc-AC073043.2.1-1:3
4.1 lnc-AC073043.2.1-1:3
5.0 lnc-AC073043.2.1-1:3
5.1 lnc-HSPD1-37:4
5.2 lnc-FTCDNL1-1:4