Transcript: lnc-FRG1-6:1

Basic information

LNCipedia transcript ID: lnc-FRG1-6:1 
LNCipedia gene ID: lnc-FRG1-6
Ensembl Gene ID: ENSG00000251310
Ensembl Transcript ID: ENST00000514966
Location (hg38): chr4:189193100-189204877
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007703; ENST00000514966; ENST00000514966.1; RP11-706F1.1-001; OTTHUMT00000366362.1; NONHSAT099769
Alternative gene names: XLOC_003838; linc-FRG1-6; ENSG00000251310; RP11-706F1.1; ENSG00000251310.1; OTTHUMG00000161908.1; AC107391.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.8125 non-coding 
CPAT coding probability 5.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FRG1-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRG1-6:1
3.1 lnc-FRG1-6:1
4.0 lnc-FRG1-6:1
4.1 lnc-FRG1-6:1
5.0 lnc-FRG1-6:1
5.1 lnc-TRIML1-11:2
5.2 lnc-FRG1-6:1