Transcript: lnc-FRG1-11:7

Basic information

LNCipedia transcript ID: lnc-FRG1-11:7 
LNCipedia gene ID: lnc-FRG1-11
Location (hg38): chr4:189550705-189576417
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 781 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008988; NONHSAT099788
Alternative gene names: XLOC_003840; linc-FRG1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -275.5257 non-coding 
CPAT coding probability 42.94% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FRG1-11:7 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FRG1-4:5
3.1 lnc-FRG1-4:5
4.0 lnc-FRG1-4:5
4.1 lnc-FRG1-4:5
5.0 lnc-FRG1-4:5
5.1 lnc-TRIML1-12:7
5.2 lnc-FRG1-11:7