Transcript: lnc-FRG1-11:11

Basic information

LNCipedia transcript ID: lnc-FRG1-11:11 
LNCipedia gene ID: lnc-FRG1-11
Location (hg38): chr4:189550748-189552291
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 713 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT099792
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.911 non-coding 
CPAT coding probability 32.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FRG1-11:11 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FRG1-4:11
4.0 lnc-FRG1-4:11
4.1 lnc-FRG1-4:11
5.0 lnc-FRG1-4:11
5.1 lnc-TRIML1-12:11
5.2 lnc-FRG1-11:11