Transcript: lnc-FRAT1-5:1

Basic information

LNCipedia transcript ID: lnc-FRAT1-5:1 
LNCipedia gene ID: lnc-FRAT1-5
Location (hg38): chr10:97185890-97193705
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 968 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_353_chr10:98945646-98953462_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.0512 non-coding 
CPAT coding probability 54.22% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FRAT1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FRAT1-5:1
4.0 lnc-FRAT1-5:1
4.1 lnc-FRAT1-5:1
5.0 lnc-FRAT1-5:1
5.1 lnc-SMC3-194:1
5.2 lnc-FRAT1-5:1