Transcript: lnc-FOXO6-2:2

Basic information

LNCipedia transcript ID: lnc-FOXO6-2:2 
LNCipedia gene ID: lnc-FOXO6-2
Ensembl Gene ID: ENSG00000235358
Ensembl Transcript ID: ENST00000445073
Location (hg38): chr1:41242575-41284861
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 709 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445073; ENST00000445073.1; RP11-399E6.1-002; OTTHUMT00000015626.1; NONHSAT002689
Alternative gene names: ENSG00000235358; RP11-399E6.1; ENSG00000235358.1; OTTHUMG00000005710.1; AC093151.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.9608 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXO6-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXO6-2:2
3.1 lnc-FOXO6-2:2
4.0 lnc-FOXO6-2:2
4.1 lnc-FOXO6-2:2
5.0 lnc-FOXO6-2:2
5.1 lnc-KCNQ4-12:16
5.2 lnc-FOXO6-2:2