Transcript: lnc-FOXN3-2:2

Basic information

LNCipedia transcript ID: lnc-FOXN3-2:2 
LNCipedia gene ID: lnc-FOXN3-2
Ensembl Gene ID: ENSG00000258792
Ensembl Transcript ID: ENST00000555560
Location (hg38): chr14:89628941-89634082
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 698 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT039195; ENST00000555560.1
Alternative gene names: ENSG00000258792.4; RP11-944C7.1; AL137230.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.177 non-coding 
CPAT coding probability 1.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXN3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-944C7.1.1-2:2
4.0 lnc-RP11-944C7.1.1-2:2
4.1 lnc-RP11-944C7.1.1-2:2
5.0 lnc-RP11-944C7.1.1-2:2
5.1 lnc-GALC-27:2
5.2 lnc-FOXN3-2:2