Transcript: lnc-FOXN3-2:1

Basic information

LNCipedia transcript ID: lnc-FOXN3-2:1 
LNCipedia gene ID: lnc-FOXN3-2
Ensembl Gene ID: ENSG00000258792
Ensembl Transcript ID: ENST00000553996
Location (hg38): chr14:89628921-89642671
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 420 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT039193; ENST00000553996.2
Alternative gene names: ENSG00000258792.4; RP11-944C7.1; AL137230.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.0993 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXN3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-944C7.1.1-2:1
4.0 lnc-RP11-944C7.1.1-2:1
4.1 lnc-RP11-944C7.1.1-2:1
5.0 lnc-RP11-944C7.1.1-2:1
5.1 lnc-GALC-27:1
5.2 lnc-FOXN3-2:1