Transcript: lnc-FOXI3-2:2

Basic information

LNCipedia transcript ID: lnc-FOXI3-2:2 
LNCipedia gene ID: lnc-FOXI3-2
Location (hg38): chr2:88448207-88452535
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1260 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000428390.1; FOXI3-201
Alternative gene names: ENSG00000214336.3; FOXI3; OTTHUMG00000155048.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3509.5904 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FOXI3-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EIF2AK3-2:2
4.0 lnc-EIF2AK3-2:2
4.1 lnc-EIF2AK3-2:2
5.0 lnc-EIF2AK3-2:2
5.1 lnc-ZNF514-110:2
5.2 lnc-FOXI3-2:2