Transcript: lnc-FOXD4L6-6:1

Basic information

LNCipedia transcript ID: lnc-FOXD4L6-6:1 
LNCipedia gene ID: lnc-FOXD4L6-6
Location (hg38): chr9:40218030-40222074
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3200 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00015811; ENST00000450520.1; RP11-216M21.7-001; OTTHUMT00000143026.2; NONHSAT131292
Alternative gene names: XLOC_007692; linc-FAM75A7-2; ENSG00000233207.1; RP11-216M21.7; OTTHUMG00000066715.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.8976 non-coding 
CPAT coding probability 10.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD4L6-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD20A3-3:1
3.1 lnc-ANKRD20A3-5:1
4.0 lnc-ANKRD20A3-5:1
4.1 lnc-ANKRD20A3-5:1
5.0 lnc-ANKRD20A3-5:1
5.1 lnc-SHB-27:1
5.2 lnc-FOXD4L6-6:1