Transcript: lnc-FOXD4L6-1:5

Basic information

LNCipedia transcript ID: lnc-FOXD4L6-1:5 
LNCipedia gene ID: lnc-FOXD4L6-1
RefSeq ID: NR_015361
Location (hg38): chr9:41100985-41107812
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3182 bp
Exons: 4
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00015565; NONHSAT131651; NR_015361; NR_015361.1
Alternative gene names: XLOC_007714; linc-FAM75A7-8; LOC440896


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.6096 non-coding 
CPAT coding probability 1.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD4L6-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4L6-1:5
3.1 lnc-FOXD4L6-1:5
4.0 lnc-FOXD4L6-1:5
4.1 lnc-FOXD4L6-1:5
5.0 lnc-FOXD4L6-1:5
5.1 lnc-SHB-37:5
5.2 lnc-FOXD4L6-1:5