Transcript: lnc-FOXD3-1:1

Basic information

LNCipedia transcript ID: lnc-FOXD3-1:1 
LNCipedia gene ID: lnc-FOXD3-1
Location (hg38): chr1:63250023-63251771
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 754 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000218; ENST00000449140; ENST00000449140.1; RP11-335E6.3-001; OTTHUMT00000025343.1; NONHSAT003663
Alternative gene names: XLOC_000233; linc-FOXD3-1; ENSG00000228734; RP11-335E6.3; ENSG00000228734.1; OTTHUMG00000009145.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.6233 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD3-1:1
3.1 lnc-FOXD3-1:1
4.0 lnc-FOXD3-1:1
4.1 lnc-FOXD3-1:1
5.0 lnc-FOXD3-1:1
5.1 lnc-FOXD3-1:1
5.2 lnc-FOXD3-1:1