Transcript: lnc-FOXC1-2:1

Basic information

LNCipedia transcript ID: lnc-FOXC1-2:1 
LNCipedia gene ID: lnc-FOXC1-2
Location (hg38): chr6:1496115-1519319
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1322 bp
Exons: 5
Sources: Biogazelle lncRNA chip; NONCODE v4
Alternative transcript names: ENST00000514601; NONHSAT106504
Alternative gene names: ENSG00000251522


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.2187 non-coding 
CPAT coding probability 12.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXC1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXC1-2:1
3.1 lnc-FOXC1-2:1
4.0 lnc-FOXC1-2:1
4.1 lnc-FOXC1-2:1
5.0 lnc-FOXC1-2:1
5.1 lnc-RIPK1-97:2
5.2 lnc-FOXC1-2:1