Transcript: lnc-FOXB1-11:1

Basic information

LNCipedia transcript ID: lnc-FOXB1-11:1 
LNCipedia gene ID: lnc-FOXB1-11
Ensembl Gene ID: ENSG00000273958
Ensembl Transcript ID: ENST00000620208
Location (hg38): chr15:60593027-60593460
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 434 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620208.1
Alternative gene names: ENSG00000273958.1; RP11-219B17.3; AC009560.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -132.5776 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXB1-11:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FOXB1-11:1
4.1 lnc-FOXB1-11:1
5.0 lnc-FOXB1-11:1
5.1 lnc-MAP2K1-80:1
5.2 lnc-FOXB1-11:1