Transcript: lnc-FOXA2-7:2

Basic information

LNCipedia transcript ID: lnc-FOXA2-7:2 
LNCipedia gene ID: lnc-FOXA2-7
RefSeq ID: NR_027090
Location (hg38): chr20:22400333-22420643
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1600 bp
Exons: 3
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027844; NONHSAT078975; NR_027090; NR_027090.1
Alternative gene names: XLOC_013680; linc-NKX2-2-2; LOC284788


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.9998 non-coding 
CPAT coding probability 6.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXA2-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-7:2
3.1 lnc-FOXA2-7:2
4.0 lnc-FOXA2-7:2
4.1 lnc-FOXA2-7:2
5.0 lnc-FOXA2-7:2
5.1 lnc-CST4-37:8
5.2 lnc-FOXA2-7:2