Transcript: lnc-FOXA1-3:1

Basic information

LNCipedia transcript ID: lnc-FOXA1-3:1 
LNCipedia gene ID: lnc-FOXA1-3
Location (hg38): chr14:37097062-37098563
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 827 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000554595.1; RP11-537P22.2-001; OTTHUMT00000410147.1; NONHSAT036454
Alternative gene names: ENSG00000258827.1; RP11-537P22.2; OTTHUMG00000170736.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.9943 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXA1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXA1-3:1
4.0 lnc-FOXA1-3:1
4.1 lnc-FOXA1-3:1
5.0 lnc-FOXA1-3:1
5.1 lnc-EFS-176:1
5.2 lnc-FOXA1-3:1