Transcript: lnc-FOXA1-2:3

Basic information

LNCipedia transcript ID: lnc-FOXA1-2:3 
LNCipedia gene ID: lnc-FOXA1-2
Location (hg38): chr14:37597164-37598347
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 613 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022712; NONHSAT036467
Alternative gene names: XLOC_010998; linc-FOXA1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.8281 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXA1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC25A21-1:1
3.1 lnc-SLC25A21-2:1
4.0 lnc-SLC25A21-2:1
4.1 lnc-SLC25A21-2:1
5.0 lnc-SLC25A21-2:1
5.1 lnc-EFS-182:1
5.2 lnc-FOXA1-2:3