Transcript: lnc-FOXA1-1:2

Basic information

LNCipedia transcript ID: lnc-FOXA1-1:2 
LNCipedia gene ID: lnc-FOXA1-1
Ensembl Gene ID: ENSG00000259087
Ensembl Transcript ID: ENST00000553425
Location (hg38): chr14:37556158-37559484
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553425.1; RP11-356O9.2-001; OTTHUMT00000411125.1; NONHSAT036463; ENST00000553425.5
Alternative gene names: ENSG00000259087.1; RP11-356O9.2; OTTHUMG00000170994.1; ENSG00000259087.5; AL121790.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.4403 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXA1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXA1-1:2
4.0 lnc-FOXA1-1:2
4.1 lnc-FOXA1-1:2
5.0 lnc-FOXA1-1:2
5.1 lnc-EFS-179:2
5.2 lnc-FOXA1-1:2