Transcript: lnc-FOS-1:1

Basic information

LNCipedia transcript ID: lnc-FOS-1:1 
LNCipedia gene ID: lnc-FOS-1
Ensembl Gene ID: ENSG00000258820
Ensembl Transcript ID: ENST00000555909
Location (hg38): chr14:75259411-75271861
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 704 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555909.1; RP11-293M10.2-001; OTTHUMT00000415042.1; NONHSAT037846; ENST00000555909.5
Alternative gene names: ENSG00000258820.1; RP11-293M10.2; OTTHUMG00000171773.1; ENSG00000258820.5; AF111167.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.5911 non-coding 
CPAT coding probability 3.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOS-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOS-1:1
4.0 lnc-FOS-1:1
4.1 lnc-FOS-1:1
5.0 lnc-FOS-1:1
5.1 lnc-BATF-7:1
5.2 lnc-FOS-1:1