Transcript: lnc-FHDC1-1:1

Basic information

LNCipedia transcript ID: lnc-FHDC1-1:1 
LNCipedia gene ID: lnc-FHDC1-1
Ensembl Gene ID: ENSG00000249022
Ensembl Transcript ID: ENST00000515232
Location (hg38): chr4:153034211-153091165
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007662; ENST00000515232; ENST00000515232.1; RP11-285C1.2-001; OTTHUMT00000365193.1; NONHSAT098824
Alternative gene names: XLOC_003742; linc-TRIM2; ENSG00000249022; RP11-285C1.2; ENSG00000249022.1; OTTHUMG00000161522.1; AC093599.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.5211 non-coding 
CPAT coding probability 28.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FHDC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FHDC1-1:1
3.1 lnc-FHDC1-1:1
4.0 lnc-FHDC1-1:1
4.1 lnc-FHDC1-1:1
5.0 lnc-FHDC1-1:1
5.1 lnc-ARFIP1-9:1
5.2 lnc-FHDC1-1:1