Transcript: lnc-FGFR1OP-20:2

Basic information

LNCipedia transcript ID: lnc-FGFR1OP-20:2 
LNCipedia gene ID: lnc-FGFR1OP-20
Ensembl Gene ID: ENSG00000233365
Ensembl Transcript ID: ENST00000444219
RefSeq ID: NR_125862
Location (hg38): chr6:166236969-166256947
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1548 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT116034; ENST00000444219.2; NR_125862.1
Alternative gene names: ENSG00000233365.2; RP4-655C5.4; AL121956.1; LOC101929297


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.5014 non-coding 
CPAT coding probability 4.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGFR1OP-20:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFR1OP-4:2
4.0 lnc-FGFR1OP-4:2
4.1 lnc-FGFR1OP-4:2
5.0 lnc-FGFR1OP-4:2
5.1 lnc-SYTL3-67:2
5.2 lnc-FGFR1OP-20:2