Transcript: lnc-FCHSD2-2:1

Basic information

LNCipedia transcript ID: lnc-FCHSD2-2:1 
LNCipedia gene ID: lnc-FCHSD2-2
Ensembl Gene ID: ENSG00000215841
Ensembl Transcript ID: ENST00000400985
Location (hg38): chr11:73214998-73215913
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 262 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000400985.3; RP11-800A3.2-001; OTTHUMT00000397334.1; NONHSAT022815
Alternative gene names: ENSG00000215841.3; RP11-800A3.2; OTTHUMG00000167965.1; AP002761.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.7128 non-coding 
CPAT coding probability 1.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FCHSD2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FCHSD2-2:1
4.0 lnc-FCHSD2-2:1
4.1 lnc-FCHSD2-2:1
5.0 lnc-FCHSD2-2:1
5.1 lnc-UCP3-29:11
5.2 lnc-FCHSD2-2:1