Transcript: lnc-FCGR3B-2:1

Basic information

LNCipedia transcript ID: lnc-FCGR3B-2:1 
LNCipedia gene ID: lnc-FCGR3B-2
Ensembl Gene ID: ENSG00000234211
Ensembl Transcript ID: ENST00000453111
Location (hg38): chr1:161671978-161674824
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 394 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453111.1; RP11-25K21.1-001; OTTHUMT00000157323.1; NONHSAT007198
Alternative gene names: ENSG00000234211.1; RP11-25K21.1; OTTHUMG00000074100.1; ENSG00000234211.2; AL451067.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.5164 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FCGR3B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FCGR3B-2:1
4.0 lnc-FCGR3B-2:1
4.1 lnc-FCGR3B-2:1
5.0 lnc-FCGR3B-2:1
5.1 lnc-SH2D1B-14:1
5.2 lnc-FCGR3B-2:1