Transcript: lnc-FAT1-3:3

Basic information

LNCipedia transcript ID: lnc-FAT1-3:3 
LNCipedia gene ID: lnc-FAT1-3
RefSeq ID: NR_038931
Location (hg38): chr4:187304083-187505613
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2432 bp
Exons: 5
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038931.1
Alternative gene names: LOC339975


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -142.3752 non-coding 
CPAT coding probability 93.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FAT1-3:3 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-FAT1-3:3
5.1 lnc-FAT1-3:3
5.2 lnc-FAT1-3:3