Transcript: lnc-FAT1-3:1

Basic information

LNCipedia transcript ID: lnc-FAT1-3:1 
LNCipedia gene ID: lnc-FAT1-3
Ensembl Gene ID: ENSG00000250658
Ensembl Transcript ID: ENST00000511385
Location (hg38): chr4:187304083-187309682
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2114 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007930; ENST00000511385; ENST00000511385.1; RP11-138B4.1-001; OTTHUMT00000360092.1; NONHSAT099689
Alternative gene names: XLOC_004217; linc-FAT1-8; ENSG00000250658; RP11-138B4.1; ENSG00000250658.1; OTTHUMG00000160295.1; AC097652.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.3752 non-coding 
CPAT coding probability 96.73% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FAT1-3:1 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAT1-3:1
3.1 lnc-FAT1-3:1
4.0 lnc-FAT1-3:1
4.1 lnc-FAT1-3:1
5.0 lnc-FAT1-3:1
5.1 lnc-FAT1-3:1
5.2 lnc-FAT1-3:1