Transcript: lnc-FASLG-2:1

Basic information

LNCipedia transcript ID: lnc-FASLG-2:1 
LNCipedia gene ID: lnc-FASLG-2
Location (hg38): chr1:172775905-173064015
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 799 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000432694.1; RP1-15D23.2-001; OTTHUMT00000098115.1; NONHSAT007619
Alternative gene names: ENSG00000224228.1; RP1-15D23.2; OTTHUMG00000040853.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.0365 non-coding 
CPAT coding probability 14.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FASLG-2:1 no no no no

Available literature

  1. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FASLG-2:1
4.0 lnc-FASLG-2:1
4.1 lnc-FASLG-2:1
5.0 lnc-FASLG-2:1
5.1 lnc-MAEL-99:1
5.2 lnc-FASLG-2:1